Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015927842.1_cds_XP_016475545.1_67465
CDS Infomation

[gene=LOC107797197] [db_xref=GeneID:107797197] [protein=E3 ubiquitin-protein ligase RHF2A-like] [protein_id=XP_016475545.1] [location=complement(join(42371..42547,43813..43866,45751..45867,46189..46456,46570..46654,46804..47224,47316..47424,47528..47590,48701..48747,48827..48958))] [gbkey=CDS]
Sequence

ATGGAGGACGGCAAGATGTCTGAGGATATTTTGACTTCAGCTGCGGCATTTGTTGAAGGT
GGAATTCAGGATGCCTGCGATGATGCCTGCAGCATATGTCTTGAAGCATTTTGTGACAGT
GATCCTTCTACGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGTATTCTTGAATGG
TGTCAGCGAAGCTCCCAGTGCCCCATGTGTTGGCAGGCTCTCAGCTTGAAAGACCCTAAC
AACCAGGAATTGTTGGATGCAGTAGAGCACGAGAGAAACATCAGGATGAATCCTCCTAGA
AACACCACAATCTTTCACCATCCAACTCTAGGAGATTTTGAATTACAGCATTTACCTGTA
AGTGCAACTGATTCTGAACTTGAAGAGCGTATCTTTCAGCACTTAGCTGCTGCCGCTGCC
ATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCAGCGAGGTAGGTCATCAGGTCAA
GGTCGTCCCCACTTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTGCTGCTGCTGCT
GCTTCATCTTCTACTCAAAGGAGTGGGGGTGGACCCACTCCTGCAGTCTTGGTTTCTGGT
CAGGATTCTCCAATTGTTGCTGTCGGAGAAGGTTCTGGACAACTAGTCACTCAACCATCT
TCTTTTCAAGCTGATCAGGTTTCTGCCTCTGGGTCAGGATCAAATGCTGCTGTTAATCAA
CTTGGGACTTCGTCAAATGATAGGTGTGTTTATTTGTCAAGCTTGGTTGAGAGCCTTCTC
GTGGATTTTTCCCTTTTTGATAGCTATATCATTTTTCTTAATTCNATAAAGTCTCGACTT
AGTGCAATGTCAATGAGATACAAAGAATCTTTAACGAAGAGTTCAAGGGGTTGGAAGGAG
AAATTTTTCTCTCGCAACAGTTCGACATCAGACCATGGTCTGGAATCTAGGAATGAAGTC
AGTGCAGCTGTTGCCACTGTATCACACCTGATGGAGCATCTGGAAACCACAGATAGCAGA
GCCAGTTCTGCTGAATCAAATATATTGGAGGAGACTTTACCTGCTGGACGTGCTGAGCAG
CATATACCTGAGATTGATGATACCCATTCTTTAAATGAGGATAATTCCCCAATGACTTCA
GGGCTCTTAGCACCTAGTGCTGCTAGATTTGATGATAGGAGCTGCCTATTGTATGTCAAG
TGTATACTGATTGACACAGAAAAGCGTTGTTGTGTCGAGCAAGTGAACTTCCTGCCAACA
CCAATGATATATGGTTTGCATCTTATTGGATATGTGAGGATTGTTCTAAAACCAGCTTCC
AAAAGAATAAAATGTCCAGAGAGGACAGAGTCGTCTGGTCTTCTCTCTGTCAATCAGCTA
AGAATGCCACAGCACCATTTGCATTACACAGCTGGTCACCAAAAGTACAGAGACAGAGAA
GCTACATACTGGAAGCAGACTGCATCAGGATAG

Peptide Sequence

PEP ID

XP_016475545.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Nicotiana tabacum]
Sequence

MEDGKMSEDILTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTGCKHEFHLQCILEW
CQRSSQCPMCWQALSLKDPNNQELLDAVEHERNIRMNPPRNTTIFHHPTLGDFELQHLPV
SATDSELEERIFQHLAAAAAMGRTRHLARREGQRGRSSGQGRPHFLVFSTHPNAPPAAAA
ASSSTQRSGGGPTPAVLVSGQDSPIVAVGEGSGQLVTQPSSFQADQVSASGSGSNAAVNQ
LGTSSNDRCVYLSSLVESLLVDFSLFDSYIIFLNSIKSRLSAMSMRYKESLTKSSRGWKE
KFFSRNSSTSDHGLESRNEVSAAVATVSHLMEHLETTDSRASSAESNILEETLPAGRAEQ
HIPEIDDTHSLNEDNSPMTSGLLAPSAARFDDRSCLLYVKCILIDTEKRCCVEQVNFLPT
PMIYGLHLIGYVRIVLKPASKRIKCPERTESSGLLSVNQLRMPQHHLHYTAGHQKYRDRE
ATYWKQTASG

Transcript Sequence

Gene sequence data has not been registered.